STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010036934Uncharacterized protein; Belongs to the DEAD box helicase family. (499 aa)    
Predicted Functional Partners:
lsm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 0.946
lsm7
Sm domain-containing protein.
    
 0.943
ENSLCAP00010046359
Decapping mRNA 2.
   
 0.928
dcp1b
mRNA_decap_C domain-containing protein.
   
 0.927
dcp1a
mRNA_decap_C domain-containing protein.
   
 0.923
ddx6
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
  
 
0.901
LOC108876694
Uncharacterized protein.
   
 0.901
LOC108897740
Uncharacterized protein.
   
 0.901
LOC108880713
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
  
 
0.900
Patl2
PAT1 homolog 2.
   
 0.900
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (30%) [HD]