STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc22a18MFS domain-containing protein. (416 aa)    
Predicted Functional Partners:
phlda2
PH domain-containing protein.
      
 0.639
LOC108875330
Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.
      
 0.588
Slc22a31
Solute carrier family 22, member 31.
   
  
 0.579
slc22a16
MFS domain-containing protein.
   
  
 0.545
LOC108875345
Oxysterol-binding protein; Belongs to the OSBP family.
   
  
 0.543
DLK1
Delta like non-canonical Notch ligand 1.
      
 0.487
LOC108873289
MAGE domain-containing protein.
   
  
 0.483
OSBPL8
Oxysterol-binding protein; Belongs to the OSBP family.
   
  
 0.468
ENSLCAP00010016697
Uncharacterized protein; Belongs to the potassium channel family.
      
 0.434
LOC108887807
Uncharacterized protein; Belongs to the potassium channel family.
      
 0.434
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.