STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108890038Uncharacterized protein. (368 aa)    
Predicted Functional Partners:
LOC108872486
Uncharacterized protein.
  
 
0.744
LOC108898852
Uncharacterized protein.
   
    0.544
LOC108873234
Somatotropin; Growth hormone plays an important role in growth control and is involved in the regulation of several anabolic processes. Implicated as an osmoregulatory substance important for seawater adaptation; Belongs to the somatotropin/prolactin family.
   
    0.544
LOC108877471
LRRNT domain-containing protein.
   
  
 0.536
LOC108874718
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
   
    0.480
ENSLCAP00010023696
Neuropeptide Y receptor Y7; Belongs to the G-protein coupled receptor 1 family.
   
    0.480
ENSLCAP00010041994
Neuropeptide Y receptor Y2; Belongs to the G-protein coupled receptor 1 family.
   
    0.480
LOC108872617
Uncharacterized protein.
      
 0.468
TMEM179
Uncharacterized protein.
      
 0.465
UBR1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.434
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.