STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem242Uncharacterized protein. (145 aa)    
Predicted Functional Partners:
Serac1
Serine active site containing 1.
      
 0.639
siae
SASA domain-containing protein.
      
 0.629
Gtf2h5
General transcription factor IIH, polypeptide 5.
      
 0.621
tfb1m
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
      
 0.593
tmem70
Uncharacterized protein.
      
 0.587
Tmem196
Uncharacterized protein.
      
 0.585
ENSLCAP00010001364
Crystallin, zeta (quinone reductase)-like 1.
      
 0.583
Urb1
URB1 ribosome biogenesis homolog.
      
 0.578
ENSLCAP00010012440
Tubby like protein 4a; Belongs to the TUB family.
      
 0.499
ENSLCAP00010042055
Tubby like protein 4b; Belongs to the TUB family.
      
 0.499
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.