STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLEKHG1Pleckstrin homology and RhoGEF domain containing G1. (1647 aa)    
Predicted Functional Partners:
ENSLCAP00010032062
Uncharacterized protein.
     
 0.645
yap1
Uncharacterized protein.
    
  0.607
ENSLCAP00010001617
Si:dkey-34e4.1.
      
 0.606
ENSLCAP00010046715
PID domain-containing protein.
      
 0.606
ENSLCAP00010046720
Uncharacterized protein.
      
 0.606
LOC108883795
PID domain-containing protein.
      
 0.606
ENSLCAP00010035657
Iodotyrosine deiodinase.
      
 0.599
GPR149
G protein-coupled receptor 149.
    
 
 0.576
fermt1
PH domain-containing protein.
    
 0.553
Fermt2
Fermitin family member 2.
    
 0.553
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.