STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nr1h3Uncharacterized protein. (464 aa)    
Predicted Functional Partners:
ENSLCAP00010005352
Retinoid X receptor, alpha a.
   
0.932
LOC108891119
Uncharacterized protein.
   
0.932
ENSLCAP00010025087
Uncharacterized protein.
   
0.922
LOC108886934
Uncharacterized protein.
   
0.922
LOC108880950
Uncharacterized protein.
    
 0.860
Ncoa2
Nuclear receptor coactivator 2.
    
 0.860
ENSLCAP00010041266
Nuclear receptor coactivator 1.
    
 0.860
LOC108900232
Uncharacterized protein.
    
 0.860
ENSLCAP00010043724
Nuclear receptor coactivator 3.
    
 0.860
ncor1
Uncharacterized protein.
    
 0.857
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.