STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gemin7Uncharacterized protein. (128 aa)    
Predicted Functional Partners:
LOC108877922
Uncharacterized protein.
    
 0.990
gemin8
Uncharacterized protein.
    
 0.988
Gemin6
Gem (nuclear organelle) associated protein 6.
    
 0.976
ENSLCAP00010000369
Gem (nuclear organelle) associated protein 4.
    
 0.959
ENSLCAP00010027095
Gem (nuclear organelle) associated protein 5.
    
 0.919
strap
WD_REPEATS_REGION domain-containing protein.
    
 
 0.913
ENSLCAP00010052618
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
    
 0.906
gemin2
Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.
    
 0.899
LOC108878639
Tudor domain-containing protein.
    
 0.897
ENSLCAP00010046179
Uncharacterized protein.
    
 0.846
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.