STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108876450Isocitrate dehydrogenase [NAD] subunit, mitochondrial. (391 aa)    
Predicted Functional Partners:
ENSLCAP00010000253
Aconitase 2, mitochondrial.
  
 0.980
ACO2
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
  
 0.980
ENSLCAP00010017331
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
0.979
ENSLCAP00010023114
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
0.979
idh1
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.962
ENSLCAP00010046864
Aconitase 1, soluble; Belongs to the aconitase/IPM isomerase family.
  
 0.962
Idh2
Isocitrate dehydrogenase 2 (NADP+), mitochondrial.
  
 0.960
OGDH
Transket_pyr domain-containing protein.
  
 0.955
ENSLCAP00010033990
Oxoglutarate dehydrogenase like.
  
 0.955
ogdh
Transket_pyr domain-containing protein.
  
 0.955
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.