STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108902018Uncharacterized protein. (218 aa)    
Predicted Functional Partners:
ENSLCAP00010038334
Cyclin G associated kinase.
    
 
 0.731
Rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.598
Hps1
Hermansky-Pudlak syndrome 1.
     
 0.503
Ankrd27
Ankyrin repeat domain 27 (VPS9 domain).
    
 
 0.497
ENSLCAP00010036848
ANK_REP_REGION domain-containing protein.
    
 
 0.497
Ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.493
dnajc6
Uncharacterized protein.
    
 
 0.481
Hps4
Hermansky-Pudlak syndrome 4.
     
 0.463
LOC108890966
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.441
ENSLCAP00010038656
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.441
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (18%) [HD]