STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010043276Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (941 aa)    
Predicted Functional Partners:
ENSLCAP00010048015
Integrin beta.
   
 0.834
LOC108880947
Integrin beta; Belongs to the integrin beta chain family.
   
 0.764
ENSLCAP00010042789
Integrin beta.
   
 0.764
LOC108897167
Integrin beta.
   
 0.764
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.764
ENSLCAP00010042788
Integrin beta; Belongs to the integrin beta chain family.
    
 0.762
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.751
ENSLCAP00010008517
Integrin beta; Belongs to the integrin beta chain family.
   
 0.722
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.722
LOC108872765
Integrin beta; Belongs to the integrin beta chain family.
   
 0.722
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.