STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010043328Zgc:56622. (291 aa)    
Predicted Functional Partners:
gclc
Uncharacterized protein.
   
 0.697
Sord
Sorbitol dehydrogenase.
  
 
 0.462
taldo1
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
 0.448
ENSLCAP00010002757
Aldo_ket_red domain-containing protein.
  
 0.428
ENSLCAP00010006647
Aldo_ket_red domain-containing protein.
  
 0.428
KCNAB3
Aldo_ket_red domain-containing protein.
  
 0.428
KCNAB1
Aldo_ket_red domain-containing protein.
  
 0.428
LOC108892735
Aldo_ket_red domain-containing protein.
  
 0.428
ENSLCAP00010017186
Aldo_ket_red domain-containing protein.
  
 0.428
ENSLCAP00010033519
Potassium voltage-gated channel, shaker-related subfamily, beta member 1 b.
  
 0.428
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.