STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108894122Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (506 aa)    
Predicted Functional Partners:
LOC108893847
Uncharacterized protein.
 
 
 0.680
CAPNS1
Uncharacterized protein.
 
 
 0.676
LOC108880508
Uncharacterized protein.
   
 
 0.652
LOC108874378
Uncharacterized protein.
     
 0.650
bax
Uncharacterized protein.
     
 0.650
ENSLCAP00010029360
Protein disulfide-isomerase.
   
 
 0.540
ENSLCAP00010038150
Intersectin 2a.
   
 
  0.538
ENSLCAP00010057040
Intersectin 2b.
   
 
  0.538
LOC108890482
Tyrosine-protein phosphatase non-receptor type.
    
 
 0.531
itm2b
BRICHOS domain-containing protein.
   
 
 0.524
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.