STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010045721Transducer of ERBB2, 1b. (293 aa)    
Predicted Functional Partners:
LOC108882732
Uncharacterized protein.
    
 0.768
cnot8
Uncharacterized protein.
    
 0.768
Cnot1
CCR4-NOT transcription complex, subunit 1.
    
 0.685
cnot10
Uncharacterized protein.
    
 0.665
ENSLCAP00010039591
Uncharacterized protein.
    
 0.588
ENSLCAP00010041244
CCR4-NOT transcription complex, subunit 11.
    
 0.588
LOC108885883
Uncharacterized protein.
    
 0.554
LOC108886956
Uncharacterized protein.
    
 0.554
CNOT2
NOT2_3_5 domain-containing protein.
    
  0.549
ENSLCAP00010040631
CCR4-NOT transcription complex, subunit 2.
    
  0.549
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.