STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspgANK_REP_REGION domain-containing protein. (666 aa)    
Predicted Functional Partners:
tasp1
Uncharacterized protein.
   
  
 0.578
cfap52
WD_REPEATS_REGION domain-containing protein.
 
  
  0.485
ift81
IFT81_CH domain-containing protein.
    
 0.472
LOC108889079
Uncharacterized protein.
 
  
  0.470
asns
Glutamine amidotransferase type-2 domain-containing protein.
      
 0.445
ift22
Uncharacterized protein.
    
 0.443
ENSLCAP00010026700
Intraflagellar transport 88 homolog.
   
 0.437
ift52
ABC_transp_aux domain-containing protein.
    
 0.431
Ubxn7
UBX domain protein 7.
    
 0.421
Grem1
Gremlin 1a, DAN family BMP antagonist.
     
 0.419
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.