STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010045896LAM_G_DOMAIN domain-containing protein. (271 aa)    
Predicted Functional Partners:
ENSLCAP00010010071
Fibrillar collagen NC1 domain-containing protein.
 
      0.899
ENSLCAP00010045917
Fibrillar collagen NC1 domain-containing protein.
 
      0.899
ENSLCAP00010050864
Fibrillar collagen NC1 domain-containing protein.
 
      0.899
Col5a3
Fibrillar collagen NC1 domain-containing protein.
 
      0.897
Col1a2
Collagen, type I, alpha 2.
 
 
 
  0.688
ENSLCAP00010030632
Uncharacterized protein.
 
      0.649
ENSLCAP00010031632
Collagen, type I, alpha 1b.
 
 
 
  0.600
LOC108875075
C1q domain-containing protein.
 
      0.597
ENSLCAP00010022208
Collagen, type V, alpha 2b.
 
 
 
  0.576
ENSLCAP00010018913
Collagen, type V, alpha 2a.
 
 
 
  0.563
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.