STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108881282Uncharacterized protein. (1668 aa)    
Predicted Functional Partners:
ENSLCAP00010038150
Intersectin 2a.
   
 
 0.953
ENSLCAP00010057040
Intersectin 2b.
   
 
 0.953
Mttp
Microsomal triglyceride transfer protein.
   
 0.831
LOC108898295
Uncharacterized protein.
   
 0.737
ENSLCAP00010021877
Uncharacterized protein.
   
 0.737
LOC108890650
Uncharacterized protein.
   
 0.737
ENSLCAP00010001608
Intersectin 1 (SH3 domain protein).
   
 
  0.612
ENSLCAP00010021885
Apolipoprotein Eb.
   
 0.612
LOC108899412
Uncharacterized protein.
   
 0.612
npc2
ML domain-containing protein.
     
 0.587
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.