STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HGDHomogentisate 1,2-dioxygenase. (470 aa)    
Predicted Functional Partners:
hpdl
4-hydroxyphenylpyruvate dioxygenase.
  
 0.925
LOC108893513
4-hydroxyphenylpyruvate dioxygenase.
  
 0.924
LOC108878769
4-hydroxyphenylpyruvate dioxygenase.
  
 0.924
gstz1
Uncharacterized protein; Belongs to the GST superfamily.
 
 
 0.916
fah
Fumarylacetoacetase.
 
 0.902
FAHD2A
Fumarylacetoacetate hydrolase domain containing 2A.
  
 
 0.802
fahd1
FAA_hydrolase domain-containing protein.
  
 
 0.802
LOC108883778
Uncharacterized protein.
   
    0.776
agxt2
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  
 0.753
Tat
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
   
  
 0.702
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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