STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010047781Growth arrest-specific 1b. (265 aa)    
Predicted Functional Partners:
ptch2
SSD domain-containing protein.
     
 0.963
ihh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.943
LOC108880474
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.943
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.943
ENSLCAP00010011382
Cell adhesion associated, oncogene regulated.
     
 0.924
boc
Uncharacterized protein.
     
 0.924
ENSLCAP00010058970
Uncharacterized protein.
  
  
 
0.906
Lrp2
Low density lipoprotein receptor-related protein 2a.
     
 0.903
gas1
Uncharacterized protein.
  
  
 
0.902
ENSLCAP00010012543
Patched 1.
     
 0.652
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.