STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Foxa1Forkhead box A1. (406 aa)    
Predicted Functional Partners:
pgr
Uncharacterized protein.
    
 0.734
gata3
Uncharacterized protein.
    
 0.709
ENSLCAP00010013378
Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.
    
 0.649
ENSLCAP00010023432
E1A binding protein p300 b.
     
 0.649
nrip1
Uncharacterized protein.
     
 0.623
GATA2
GATA binding protein 2.
    
 0.616
LOC108885640
Uncharacterized protein.
    
 0.616
gata4
Uncharacterized protein.
    
 0.581
gata6
Uncharacterized protein.
    
 0.577
gtf2a1
Uncharacterized protein.
     
 0.553
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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