STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108878404Histone H2A; Belongs to the histone H2A family. (137 aa)    
Predicted Functional Partners:
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 0.892
vps72
YL1_C domain-containing protein.
    
 
 0.880
ENSLCAP00010001021
ARP6 actin related protein 6 homolog; Belongs to the actin family.
   
 
 0.852
ENSLCAP00010011538
Translocase of outer mitochondrial membrane 20.
   
 0.850
ENSLCAP00010059212
AT rich interactive domain 4A (RBP1-like).
   
 0.850
Dmap1
DNA methyltransferase 1 associated protein 1.
    
 
 0.849
Ruvbl2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 
 0.841
yeats4
Uncharacterized protein.
   
 
 0.840
actl6a
Uncharacterized protein; Belongs to the actin family.
   
 0.840
smarca5
Uncharacterized protein.
   
 0.836
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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