STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galnt13Polypeptide N-acetylgalactosaminyltransferase. (561 aa)    
Predicted Functional Partners:
ENSLCAP00010028828
Uncharacterized protein; Belongs to the glycosyltransferase 29 family.
     
 0.916
Gcnt1
Uncharacterized protein.
     
 0.915
c1galt1c1
Uncharacterized protein.
     
 0.755
LOC108881461
Uncharacterized protein.
     
 0.714
LOC108876489
Uncharacterized protein.
     
 0.714
LOC108886221
Uncharacterized protein; Belongs to the heparin-binding growth factors family.
     
 0.546
galnt2
Polypeptide N-acetylgalactosaminyltransferase.
  
  
 
0.510
dctn2
Uncharacterized protein.
     
 0.497
LOC108895827
Uncharacterized protein; Belongs to the actin family.
   
 
  0.467
LOC108883860
Uncharacterized protein.
     
 0.428
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.