STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010052505Uncharacterized protein. (86 aa)    
Predicted Functional Partners:
LOC108888746
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.759
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.759
Rag2
Recombination activating gene 2.
   
 0.661
rpl21
Uncharacterized protein.
   
 
 0.658
LOC108880436
Uncharacterized protein.
    
 0.642
mrpl2
Ribosomal_L2_C domain-containing protein.
   
 
 0.619
babam1
Uncharacterized protein.
    
 0.614
rpl8
Ribosomal_L2_C domain-containing protein.
   
 
 0.605
rpl13a
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
   
   0.600
rps27a
Ubiquitin-like domain-containing protein.
    
  0.587
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.