STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108900796Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (294 aa)    
Predicted Functional Partners:
LOC108876786
Uncharacterized protein; Belongs to the cytochrome P450 family.
   
 
 0.924
ENSLCAP00010018375
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.919
aox1
Uncharacterized protein.
     
 0.909
Aldh1a3
Aldehyde dehydrogenase 1 family, member A3; Belongs to the aldehyde dehydrogenase family.
  
 0.745
Aldh1a2
Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.
  
 0.745
ALDH1A1
Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.
  
 0.745
LOC108898512
Uncharacterized protein.
    
 0.708
LOC108876653
Uncharacterized protein.
    
 0.708
ENSLCAP00010051339
Retinol saturase (all-trans-retinol 13,14-reductase).
    
 0.708
DGAT1
O-acyltransferase.
   
 
 0.685
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.