STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nkapNkap_C domain-containing protein. (422 aa)    
Predicted Functional Partners:
fam32a
Uncharacterized protein.
    
 0.875
Prkrip1
PRKR interacting protein 1.
   
 0.869
Sde2
SDE2 telomere maintenance homolog (S. pombe).
    
 0.856
Slu7
SLU7 homolog, splicing factor.
   
 0.850
Cwc22
CWC22 spliceosome-associated protein homolog (S. cerevisiae).
   
  0.838
cdc40
WD_REPEATS_REGION domain-containing protein.
   
  0.800
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.798
syf2
Uncharacterized protein.
    
  0.798
DDX41
Uncharacterized protein.
    
  0.787
Cunh9orf78
Zgc:103692.
   
 
  0.772
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.