Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PAN2 | cnpy2 | ENSLCAP00010047884 | ENSLCAP00010055064 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] | DUF3456 domain-containing protein. | 0.735 |
PAN2 | cs | ENSLCAP00010047884 | ENSLCAP00010049588 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] | Citrate synthase; Belongs to the citrate synthase family. | 0.724 |
Wdr47 | cnpy2 | ENSLCAP00010033938 | ENSLCAP00010055064 | WD repeat domain 47a. | DUF3456 domain-containing protein. | 0.468 |
Wdr47 | rabggtb | ENSLCAP00010033938 | ENSLCAP00010054997 | WD repeat domain 47a. | Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. | 0.581 |
Wdr47 | tbck | ENSLCAP00010033938 | ENSLCAP00010010225 | WD repeat domain 47a. | Uncharacterized protein. | 0.433 |
cnpy2 | PAN2 | ENSLCAP00010055064 | ENSLCAP00010047884 | DUF3456 domain-containing protein. | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] | 0.735 |
cnpy2 | Wdr47 | ENSLCAP00010055064 | ENSLCAP00010033938 | DUF3456 domain-containing protein. | WD repeat domain 47a. | 0.468 |
cnpy2 | cnpy3 | ENSLCAP00010055064 | ENSLCAP00010042279 | DUF3456 domain-containing protein. | DUF3456 domain-containing protein. | 0.603 |
cnpy2 | cnpy4 | ENSLCAP00010055064 | ENSLCAP00010034891 | DUF3456 domain-containing protein. | DUF3456 domain-containing protein. | 0.631 |
cnpy2 | cs | ENSLCAP00010055064 | ENSLCAP00010049588 | DUF3456 domain-containing protein. | Citrate synthase; Belongs to the citrate synthase family. | 0.464 |
cnpy2 | fez1 | ENSLCAP00010055064 | ENSLCAP00010029071 | DUF3456 domain-containing protein. | Uncharacterized protein. | 0.538 |
cnpy2 | pdia6 | ENSLCAP00010055064 | ENSLCAP00010046248 | DUF3456 domain-containing protein. | Uncharacterized protein; Belongs to the protein disulfide isomerase family. | 0.443 |
cnpy2 | rabggtb | ENSLCAP00010055064 | ENSLCAP00010054997 | DUF3456 domain-containing protein. | Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. | 0.588 |
cnpy2 | rnf10 | ENSLCAP00010055064 | ENSLCAP00010044757 | DUF3456 domain-containing protein. | RING-type domain-containing protein. | 0.595 |
cnpy2 | tbck | ENSLCAP00010055064 | ENSLCAP00010010225 | DUF3456 domain-containing protein. | Uncharacterized protein. | 0.572 |
cnpy3 | cnpy2 | ENSLCAP00010042279 | ENSLCAP00010055064 | DUF3456 domain-containing protein. | DUF3456 domain-containing protein. | 0.603 |
cnpy4 | cnpy2 | ENSLCAP00010034891 | ENSLCAP00010055064 | DUF3456 domain-containing protein. | DUF3456 domain-containing protein. | 0.631 |
cs | PAN2 | ENSLCAP00010049588 | ENSLCAP00010047884 | Citrate synthase; Belongs to the citrate synthase family. | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] | 0.724 |
cs | cnpy2 | ENSLCAP00010049588 | ENSLCAP00010055064 | Citrate synthase; Belongs to the citrate synthase family. | DUF3456 domain-containing protein. | 0.464 |
cs | pdia6 | ENSLCAP00010049588 | ENSLCAP00010046248 | Citrate synthase; Belongs to the citrate synthase family. | Uncharacterized protein; Belongs to the protein disulfide isomerase family. | 0.528 |
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