STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010055131Transient receptor potential cation channel, subfamily M, member 6. (1661 aa)    
Predicted Functional Partners:
Nudt9
Nudix (nucleoside diphosphate linked moiety X)-type motif 9.
 
   
 0.814
Cnnm2
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.576
slc41a1
Uncharacterized protein.
      
 0.576
atox1
HMA domain-containing protein.
      
 0.574
LOC108887328
ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.497
trpc1
Uncharacterized protein; Belongs to the transient receptor (TC 1.A.4) family.
    
 0.494
trpv4
ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.494
Trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.474
mrs2
Magnesium transporter.
      
 0.468
LOC108897499
Uncharacterized protein.
      
 0.465
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.