STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sod1Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (154 aa)    
Predicted Functional Partners:
sod2
Uncharacterized protein.
   
 0.991
Ccs
Copper chaperone for superoxide dismutase.
  
0.976
park7
DJ-1_PfpI domain-containing protein.
  
 0.962
cat
Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.937
LOC108882310
Uncharacterized protein.
    
 
 0.875
Gpx8
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
 0.769
gpx7
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
 0.769
ENSLCAP00010040525
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
 0.769
atox1
HMA domain-containing protein.
    
 0.758
LOC108889988
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
 0.747
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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