STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc37a4MFS domain-containing protein. (429 aa)    
Predicted Functional Partners:
ENSLCAP00010040260
Solute carrier family 44, member 4; Belongs to the CTL (choline transporter-like) family.
      
 0.552
nsdhl
3Beta_HSD domain-containing protein; Belongs to the 3-beta-HSD family.
  
  
 0.538
dhcr24
FAD-binding PCMH-type domain-containing protein.
      
 0.521
msmo1
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
      
 0.520
sqle
Uncharacterized protein.
   
  
 0.507
ENSLCAP00010016756
Solute carrier family 25, member 48; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.490
OGDH
Transket_pyr domain-containing protein.
     
 0.487
ogdh
Transket_pyr domain-containing protein.
     
 0.487
Edar
Ectodysplasin A receptor.
      
 0.483
LOC108879213
Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.
      
 0.473
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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