STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCAP00010056296Forkhead box P1b. (665 aa)    
Predicted Functional Partners:
cbfb
Uncharacterized protein.
    
 0.551
nfatc2
RHD domain-containing protein.
    
 0.522
Prdm14
PR domain containing 14.
    
 0.473
ENSLCAP00010004715
Runt domain-containing protein.
    
 0.457
LOC108898077
Runt-related transcription factor.
    
 0.457
runx3
Runt-related transcription factor.
    
 0.457
LOC108902563
Runt-related transcription factor.
    
 0.457
LOC108882118
FERM domain-containing protein.
      
 0.435
AANAT
N-acetyltransferase domain-containing protein.
      
 0.429
LOC108879229
POU domain protein.
    
 0.427
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.