LOC108898292 protein (Lates calcarifer) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

LOC108898292

Uncharacterized protein. (1353 aa)

Predicted Functional Partners:

rasip1

0.554

CDC42

0.491

LOC108877499

0.491

LOC108880752

0.448

LOC108887526

0.448

LOC108902550

0.429

ENSLCAP00010057287

0.406

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	LOC108898292	ENSLCAP00010026260	ENSLCAP00010056444	Uncharacterized protein.	Uncharacterized protein.	0.491
CDC42	LOC108902550	ENSLCAP00010026260	ENSLCAP00010018233	Uncharacterized protein.	Uncharacterized protein.	0.953
ENSLCAP00010057287	LOC108898292	ENSLCAP00010057287	ENSLCAP00010056444	Interferon regulatory factor 6.	Uncharacterized protein.	0.406
LOC108877499	LOC108880752	ENSLCAP00010050203	ENSLCAP00010011091	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC108877499	LOC108887526	ENSLCAP00010050203	ENSLCAP00010051906	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC108877499	LOC108898292	ENSLCAP00010050203	ENSLCAP00010056444	Uncharacterized protein.	Uncharacterized protein.	0.491
LOC108877499	LOC108902550	ENSLCAP00010050203	ENSLCAP00010018233	Uncharacterized protein.	Uncharacterized protein.	0.953
LOC108880752	LOC108877499	ENSLCAP00010011091	ENSLCAP00010050203	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC108880752	LOC108887526	ENSLCAP00010011091	ENSLCAP00010051906	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC108880752	LOC108898292	ENSLCAP00010011091	ENSLCAP00010056444	Uncharacterized protein.	Uncharacterized protein.	0.448
LOC108880752	LOC108902550	ENSLCAP00010011091	ENSLCAP00010018233	Uncharacterized protein.	Uncharacterized protein.	0.839
LOC108887526	LOC108877499	ENSLCAP00010051906	ENSLCAP00010050203	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC108887526	LOC108880752	ENSLCAP00010051906	ENSLCAP00010011091	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC108887526	LOC108898292	ENSLCAP00010051906	ENSLCAP00010056444	Uncharacterized protein.	Uncharacterized protein.	0.448
LOC108887526	LOC108902550	ENSLCAP00010051906	ENSLCAP00010018233	Uncharacterized protein.	Uncharacterized protein.	0.839
LOC108898292	CDC42	ENSLCAP00010056444	ENSLCAP00010026260	Uncharacterized protein.	Uncharacterized protein.	0.491
LOC108898292	ENSLCAP00010057287	ENSLCAP00010056444	ENSLCAP00010057287	Uncharacterized protein.	Interferon regulatory factor 6.	0.406
LOC108898292	LOC108877499	ENSLCAP00010056444	ENSLCAP00010050203	Uncharacterized protein.	Uncharacterized protein.	0.491
LOC108898292	LOC108880752	ENSLCAP00010056444	ENSLCAP00010011091	Uncharacterized protein.	Uncharacterized protein.	0.448
LOC108898292	LOC108887526	ENSLCAP00010056444	ENSLCAP00010051906	Uncharacterized protein.	Uncharacterized protein.	0.448