STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc34Uncharacterized protein. (409 aa)    
Predicted Functional Partners:
ENSLCAP00010031025
Fleer.
   
    0.668
rsph14
Uncharacterized protein.
    
 
 0.637
LOC108885525
Uncharacterized protein.
    
 
 0.627
cfap161
Uncharacterized protein.
   
  
 0.612
DLEC1
DLEC1 cilia and flagella associated protein.
    
 0.602
ENSLCAP00010041759
Leucine rich repeat containing 23.
   
  
 0.598
ENSLCAP00010020340
Uncharacterized protein.
      
 0.594
Saxo2
Uncharacterized protein.
      
 0.583
dnpep
Uncharacterized protein; Belongs to the peptidase M18 family.
      
 0.579
cfap52
WD_REPEATS_REGION domain-containing protein.
   
  
 0.533
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.