ENSLCAP00010057287 protein (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLCAP00010057287

Interferon regulatory factor 6. (479 aa)

Predicted Functional Partners:

ENSLCAP00010044687

0.615

myd88

0.600

Ripk4

0.524

traf6

0.522

tbk1

0.512

sting1

0.484

Cdc25b

0.443

LOC108893516

0.439

ENSLCAP00010001620

0.437

LOC108883553

0.437

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdc25b	ENSLCAP00010057287	ENSLCAP00010028000	ENSLCAP00010057287	Rhodanese domain-containing protein.	Interferon regulatory factor 6.	0.443
ENSLCAP00010001620	ENSLCAP00010057287	ENSLCAP00010001620	ENSLCAP00010057287	Transmembrane p24 trafficking protein 7.	Interferon regulatory factor 6.	0.437
ENSLCAP00010001620	myd88	ENSLCAP00010001620	ENSLCAP00010022073	Transmembrane p24 trafficking protein 7.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.448
ENSLCAP00010001620	tbk1	ENSLCAP00010001620	ENSLCAP00010044084	Transmembrane p24 trafficking protein 7.	Uncharacterized protein.	0.657
ENSLCAP00010001620	traf6	ENSLCAP00010001620	ENSLCAP00010039774	Transmembrane p24 trafficking protein 7.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.909
ENSLCAP00010044687	ENSLCAP00010057287	ENSLCAP00010044687	ENSLCAP00010057287	Grainyhead-like transcription factor 3.	Interferon regulatory factor 6.	0.615
ENSLCAP00010057287	Cdc25b	ENSLCAP00010057287	ENSLCAP00010028000	Interferon regulatory factor 6.	Rhodanese domain-containing protein.	0.443
ENSLCAP00010057287	ENSLCAP00010001620	ENSLCAP00010057287	ENSLCAP00010001620	Interferon regulatory factor 6.	Transmembrane p24 trafficking protein 7.	0.437
ENSLCAP00010057287	ENSLCAP00010044687	ENSLCAP00010057287	ENSLCAP00010044687	Interferon regulatory factor 6.	Grainyhead-like transcription factor 3.	0.615
ENSLCAP00010057287	LOC108883553	ENSLCAP00010057287	ENSLCAP00010033885	Interferon regulatory factor 6.	Uncharacterized protein.	0.437
ENSLCAP00010057287	LOC108893516	ENSLCAP00010057287	ENSLCAP00010033788	Interferon regulatory factor 6.	Interferon regulatory factor.	0.439
ENSLCAP00010057287	Ripk4	ENSLCAP00010057287	ENSLCAP00010034284	Interferon regulatory factor 6.	Receptor-interacting serine-threonine kinase 4.	0.524
ENSLCAP00010057287	myd88	ENSLCAP00010057287	ENSLCAP00010022073	Interferon regulatory factor 6.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.600
ENSLCAP00010057287	sting1	ENSLCAP00010057287	ENSLCAP00010053448	Interferon regulatory factor 6.	Uncharacterized protein.	0.484
ENSLCAP00010057287	tbk1	ENSLCAP00010057287	ENSLCAP00010044084	Interferon regulatory factor 6.	Uncharacterized protein.	0.512
ENSLCAP00010057287	traf6	ENSLCAP00010057287	ENSLCAP00010039774	Interferon regulatory factor 6.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.522
LOC108883553	ENSLCAP00010057287	ENSLCAP00010033885	ENSLCAP00010057287	Uncharacterized protein.	Interferon regulatory factor 6.	0.437
LOC108883553	myd88	ENSLCAP00010033885	ENSLCAP00010022073	Uncharacterized protein.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.448
LOC108883553	tbk1	ENSLCAP00010033885	ENSLCAP00010044084	Uncharacterized protein.	Uncharacterized protein.	0.657
LOC108883553	traf6	ENSLCAP00010033885	ENSLCAP00010039774	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.990