STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108876357alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (602 aa)    
Predicted Functional Partners:
LOC108879208
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
  
 
0.925
edem1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
  
  
0.906
Txndc11
Thioredoxin domain containing 11.
   
 
 0.671
Trpc4ap
Transient receptor potential cation channel, subfamily C, member 4 associated protein a.
 
 
  
 0.606
Xbp1
BZIP domain-containing protein.
     
 0.584
Dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
    
 
 0.581
sel1l
Fibronectin type-II domain-containing protein.
   
 
 0.531
ENSLCAP00010014502
Calnexin.
   
 
 0.524
LOC108900133
Uncharacterized protein.
   
 
 0.524
ENSLCAP00010028935
Si:dkey-24p1.6.
   
 
 0.520
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.