STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrp1bLow density lipoprotein receptor-related protein 1Bb. (4558 aa)    
Predicted Functional Partners:
ENSLCAP00010007678
Agrin.
    
 0.700
LOC108897345
Dickkopf_N domain-containing protein.
    
 0.634
hpx
Hemopexin; Binds heme and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation.
    
 0.632
ENSLCAP00010038150
Intersectin 2a.
    
 0.617
ENSLCAP00010057040
Intersectin 2b.
    
 0.617
Reln
Uncharacterized protein.
    
 0.616
ldlrap1
PID domain-containing protein.
    
 0.610
pcsk9
Uncharacterized protein; Belongs to the peptidase S8 family.
    
 0.609
ENSLCAP00010033657
Uncharacterized protein.
   
 0.580
Dab2
Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila).
    
 0.571
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.