STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7KFW9_ARALLAAA domain-containing protein. (720 aa)    
Predicted Functional Partners:
D7KUA5_ARALL
ATP-dependent Clp protease proteolytic subunit.
   
 
 0.915
D7LPM3_ARALL
PDZ domain-containing protein.
  
  
 0.884
D7KNW8_ARALL
Uncharacterized protein.
      
 0.860
D7MJH1_ARALL
PDZ domain-containing protein.
  
  
 0.807
D7MSX6_ARALL
Uncharacterized protein.
   
  
 0.801
D7KRQ8_ARALL
ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family.
   
 
 0.792
D7MCT6_ARALL
Uncharacterized protein.
  
  
 0.783
psbC
Photosystem II CP43 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbC subfamily.
      
 0.771
D7M1N0_ARALL
HCF136.
   
  
 0.763
D7KFT9_ARALL
ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family.
   
 
 0.761
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.