STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7KIW4_ARALLEMB3001. (836 aa)    
Predicted Functional Partners:
D7LVX6_ARALL
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.994
D7L3Z5_ARALL
SP-RING-type domain-containing protein.
    
 
 0.959
D7MIT8_ARALL
Zinc ion binding protein.
  
  
0.944
D7MEL8_ARALL
Small ubiquitin-related modifier.
    
 0.943
D7LFK8_ARALL
Ubiquitin-like domain-containing protein.
    
 0.931
D7MV08_ARALL
Small ubiquitin-related modifier.
    
 0.918
D7MV06_ARALL
Small ubiquitin-related modifier.
    
 0.909
D7MV07_ARALL
Small ubiquitin-related modifier.
    
 0.909
SAE2
Sumo-activating enzyme 2.
    
 
 0.877
D7MM59_ARALL
Rad60-SLD domain-containing protein.
    
 0.875
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.