STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7KXZ3_ARALLRRM domain-containing protein. (537 aa)    
Predicted Functional Partners:
D7KIB0_ARALL
Pentatricopeptide repeat-containing protein.
      
 0.817
D7KZX9_ARALL
RRM domain-containing protein.
      
 0.817
D7L7S8_ARALL
PTAC13.
   
  
 0.810
D7L763_ARALL
KH domain-containing protein.
      
 0.780
D7LYB8_ARALL
ABC1 family protein.
      
 0.775
D7KCR1_ARALL
Aspartate-glutamate racemase family.
      
 0.771
D7LJS5_ARALL
TPR_REGION domain-containing protein.
      
 0.771
D7LN52_ARALL
DYW_deaminase domain-containing protein; Belongs to the PPR family. PCMP-H subfamily.
      
 0.769
D7M6N1_ARALL
Formate dehydrogenase, mitochondrial; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.
      
 0.760
D7MQ38_ARALL
Uncharacterized protein.
      
 0.737
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.