STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7L1B7_ARALLUncharacterized protein. (565 aa)    
Predicted Functional Partners:
D7M0W5_ARALL
RuvB-like helicase; Belongs to the RuvB family.
   
 0.747
D7L9N6_ARALL
UBA domain-containing protein.
    
 0.740
D7M6K6_ARALL
Predicted protein.
    
 0.740
D7LIC9_ARALL
Uncharacterized protein.
    
 0.723
D7KPY5_ARALL
Uncharacterized protein.
  
 
 0.703
D7MXN3_ARALL
Predicted protein.
  
  
 0.672
D7M0X1_ARALL
Uncharacterized protein.
  
 
 0.662
D7LS90_ARALL
DUF4378 domain-containing protein.
 
 
 0.645
D7LCJ1_ARALL
LOB domain-containing protein.
   
 0.644
D7LDA1_ARALL
DUF4378 domain-containing protein.
 
 
 0.639
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.