STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7L8F4_ARALLENDO3c domain-containing protein. (1078 aa)    
Predicted Functional Partners:
D7KXJ2_ARALL
Cytosine-specific methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
      
 0.800
D7MGW3_ARALL
Chromomethylase 2.
      
 0.758
D7MN85_ARALL
DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
      
 0.757
D7M6L4_ARALL
Uncharacterized protein.
      
 0.749
D7MPL0_ARALL
RRM domain-containing protein.
      
 0.730
D7L3X7_ARALL
Uncharacterized protein.
    
 
 0.725
D7KPZ7_ARALL
SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.723
D7L383_ARALL
Predicted protein.
   
 
 0.721
D7LEE8_ARALL
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.713
D7LRW4_ARALL
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
    
 
 0.713
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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