STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7LSG6_ARALLUncharacterized protein. (312 aa)    
Predicted Functional Partners:
D7KI96_ARALL
Uncharacterized protein.
      
 0.818
D7M617_ARALL
Phosducin domain-containing protein.
      
 0.780
D7LEL5_ARALL
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
      
 0.773
NTMC2T2.1
Plant synaptotagmin.
      
 0.771
D7MNK3_ARALL
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).
      
 0.771
D7LVZ1_ARALL
Predicted protein.
      
 0.737
D7LI13_ARALL
WRC domain-containing protein.
      
 0.729
D7LI16_ARALL
DNAJ heat shock N-terminal domain-containing protein.
      
 0.728
D7LBV1_ARALL
Uncharacterized protein.
      
 0.720
D7M9G2_ARALL
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
      
 0.719
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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