STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7LZ80_ARALLEpimerase domain-containing protein. (326 aa)    
Predicted Functional Partners:
D7LMF8_ARALL
40S ribosomal protein S29.
   
 0.848
D7KRV1_ARALL
Uncharacterized protein.
   
 0.816
D7L2Z2_ARALL
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.769
D7MDJ7_ARALL
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.769
D7MM75_ARALL
DNA-binding family protein.
      
 0.759
D7KRW2_ARALL
Uncharacterized protein.
   
 
 0.747
D7L228_ARALL
40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
   
 0.744
D7LXU5_ARALL
40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
   
 0.744
D7L8B4_ARALL
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 0.741
D7M7Y0_ARALL
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 0.741
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.