STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7M145_ARALLPredicted protein. (444 aa)    
Predicted Functional Partners:
D7MR97_ARALL
TOG domain-containing protein.
   
 0.792
D7KJT8_ARALL
U2 small nuclear ribonucleoprotein A.
   
 0.765
D7LZ45_ARALL
Matrin-type domain-containing protein.
   
 0.760
D7MJH2_ARALL
Predicted protein.
   
 0.760
D7M1W5_ARALL
Predicted protein.
   
 0.723
D7MER2_ARALL
PSP domain-containing protein.
   
 0.723
D7L2Q2_ARALL
Predicted protein.
   
 0.703
D7LF03_ARALL
Hydroxyproline-rich glycoprotein family protein.
   
 0.703
D7KG09_ARALL
Tr-type G domain-containing protein.
   
 
 0.698
D7L1S4_ARALL
Sm domain-containing protein.
   
 0.685
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.