STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7M550_ARALLUncharacterized protein. (862 aa)    
Predicted Functional Partners:
D7L3V2_ARALL
Uncharacterized protein.
      
 0.875
D7MUB4_ARALL
Glycosyl hydrolase family 1 protein; Belongs to the glycosyl hydrolase 1 family.
      
 0.818
D7MA45_ARALL
Uncharacterized protein.
      
 0.804
D7M3Q5_ARALL
Uncharacterized protein.
      
 0.773
D7LJX5_ARALL
Protease-associated domain-containing protein.
      
 0.771
D7MQL1_ARALL
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
      
 0.771
D7M3Z4_ARALL
Uncharacterized protein.
      
 0.769
D7KSD5_ARALL
Beta-hexosaminidase.
     
 0.762
D7MFV7_ARALL
Glucose-6-phosphate 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
      
 0.737
D7LR85_ARALL
Alpha-mannosidase.
      
 0.729
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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