STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7MC56_ARALLGlycoside hydrolase family 28 protein. (395 aa)    
Predicted Functional Partners:
D7LFQ2_ARALL
Uncharacterized protein.
  
 
 
0.687
D7ML25_ARALL
Uncharacterized protein.
  
  
 
0.685
D7L720_ARALL
Uncharacterized protein.
  
  
 
0.684
D7L721_ARALL
Exopolygalacturonase.
  
  
 
0.682
D7MCV7_ARALL
Glycoside hydrolase family 28 protein.
  
  
 
0.682
D7L2B6_ARALL
Polygalacturonase.
  
  
 
0.681
D7LXB1_ARALL
Predicted protein.
  
  
 
0.681
D7KBC0_ARALL
Uncharacterized protein.
  
  
 
0.676
D7KET3_ARALL
Pectate lyase.
   
 
  0.667
D7KN70_ARALL
Pectate lyase.
   
 
  0.651
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.