STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7MP29_ARALLZinc finger family protein. (166 aa)    
Predicted Functional Partners:
D7KMA3_ARALL
Zinc finger family protein.
      
 0.778
D7M9S7_ARALL
Aspartyl protease family protein; Belongs to the peptidase A1 family.
      
 0.773
D7LC69_ARALL
BTB/POZ domain-containing protein.
     
 0.766
D7KBJ1_ARALL
Kelch repeat-containing F-box family protein.
      
 0.760
D7LYY1_ARALL
Zinc finger family protein.
      
 0.760
D7MHR2_ARALL
Uncharacterized protein.
      
 0.760
D7M805_ARALL
Uncharacterized protein.
      
 0.759
D7L940_ARALL
RING-type E3 ubiquitin transferase.
      
 0.747
D7KDI0_ARALL
Kelch repeat-containing F-box family protein.
      
 0.738
ATPP2-A14
Phloem protein 2-A14.
      
 0.738
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.