STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7MTT9_ARALLUncharacterized protein; Belongs to the peptidase C1 family. (361 aa)    
Predicted Functional Partners:
D7MP10_ARALL
Uncharacterized protein.
    
  0.839
D7LUB7_ARALL
EGF_CA domain-containing protein.
    
 
 0.835
THI1
Thiamine thiazole synthase, chloroplastic; Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5- (2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron- dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance; B [...]
      
 0.787
D7KAX2_ARALL
SERPIN domain-containing protein; Belongs to the serpin family.
    
 0.762
D7KU77_ARALL
F23N19.7.
   
 
 0.754
ALPHA-VPE
Alpha-vacuolar processing enzyme.
   
 
 0.752
D7M9C3_ARALL
GAMMA-VPE.
   
 
 0.697
D7MF46_ARALL
Uncharacterized protein.
   
 
 0.697
D7M054_ARALL
Glycosyl hydrolase family 17 protein; Belongs to the glycosyl hydrolase 17 family.
      
 0.665
D7L3E9_ARALL
Predicted protein.
      
 0.663
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.