STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0EXL4_9BRASFe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (347 aa)    
Predicted Functional Partners:
R0F0B4_9BRAS
Epimerase domain-containing protein.
   
 0.972
R0HA11_9BRAS
Uncharacterized protein; Belongs to the cytochrome P450 family.
     
 0.970
R0FSH3_9BRAS
Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
0.925
R0F4P4_9BRAS
Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
  
0.909
R0FF06_9BRAS
Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.
     
 0.909
R0I8S5_9BRAS
Epimerase domain-containing protein.
   
  
 0.713
R0FWF2_9BRAS
Uncharacterized protein; Belongs to the cytochrome P450 family.
      
 0.703
R0G3R8_9BRAS
Phenylalanine ammonia-lyase.
      
 0.703
R0HB72_9BRAS
Phenylalanine ammonia-lyase.
      
 0.703
R0HIA7_9BRAS
Phenylalanine ammonia-lyase.
      
 0.703
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.