STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0F520_9BRASUncharacterized protein. (368 aa)    
Predicted Functional Partners:
R0EWC7_9BRAS
Uncharacterized protein.
      
 0.732
R0EZT4_9BRAS
Uncharacterized protein.
      
 0.708
R0HIN0_9BRAS
Uncharacterized protein.
      
 0.708
R0HNN4_9BRAS
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
     
 0.666
R0HZP1_9BRAS
MADS-box domain-containing protein.
      
 0.662
R0G3S4_9BRAS
Lysine--tRNA ligase.
  
    0.551
R0HK90_9BRAS
Lysine--tRNA ligase.
  
    0.551
R0IPH3_9BRAS
Semialdhyde_dh domain-containing protein.
   
 
 0.525
R0I4Y6_9BRAS
MADS-box domain-containing protein.
      
 0.514
R0IIT3_9BRAS
Uncharacterized protein.
      
 0.514
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.