STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0FLW4_9BRASF-box domain-containing protein. (414 aa)    
Predicted Functional Partners:
R0F0D5_9BRAS
F-box domain-containing protein.
      
 0.613
R0H1E0_9BRAS
F-box domain-containing protein.
      
 0.613
R0I371_9BRAS
Uncharacterized protein.
      
 0.613
R0EW97_9BRAS
F-box domain-containing protein.
      
 0.609
R0HU63_9BRAS
Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.
      
 0.537
R0GHD8_9BRAS
Uncharacterized protein.
  
     0.536
R0F6K9_9BRAS
DUF4408 domain-containing protein.
  
     0.510
R0GA16_9BRAS
F-box domain-containing protein.
      
 0.505
R0HQW2_9BRAS
FBA_1 domain-containing protein.
      
 0.505
R0HNH8_9BRAS
Uncharacterized protein.
  
     0.503
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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