R0GEC8_9BRAS protein (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0GEC8_9BRAS

Prolamin_like domain-containing protein. (151 aa)

Predicted Functional Partners:

R0GCJ5_9BRAS

0.882

R0FE62_9BRAS

0.775

R0FF16_9BRAS

0.769

R0EX13_9BRAS

0.711

R0HWC1_9BRAS

0.700

R0I0S7_9BRAS

0.616

R0GQ82_9BRAS

0.584

R0F8H6_9BRAS

0.542

R0GGD4_9BRAS

0.540

R0EZY0_9BRAS

0.523

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0EX13_9BRAS	R0FE62_9BRAS	R0EX13	R0FE62	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	WD_REPEATS_REGION domain-containing protein.	0.705
R0EX13_9BRAS	R0GEC8_9BRAS	R0EX13	R0GEC8	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Prolamin_like domain-containing protein.	0.711
R0EX13_9BRAS	R0I0S7_9BRAS	R0EX13	R0I0S7	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.529
R0EZY0_9BRAS	R0GEC8_9BRAS	R0EZY0	R0GEC8	F-box domain-containing protein.	Prolamin_like domain-containing protein.	0.523
R0F8H6_9BRAS	R0FF16_9BRAS	R0F8H6	R0FF16	Uncharacterized protein.	Uncharacterized protein.	0.564
R0F8H6_9BRAS	R0GEC8_9BRAS	R0F8H6	R0GEC8	Uncharacterized protein.	Prolamin_like domain-containing protein.	0.542
R0FE62_9BRAS	R0EX13_9BRAS	R0FE62	R0EX13	WD_REPEATS_REGION domain-containing protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.705
R0FE62_9BRAS	R0GEC8_9BRAS	R0FE62	R0GEC8	WD_REPEATS_REGION domain-containing protein.	Prolamin_like domain-containing protein.	0.775
R0FE62_9BRAS	R0I0S7_9BRAS	R0FE62	R0I0S7	WD_REPEATS_REGION domain-containing protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.988
R0FF16_9BRAS	R0F8H6_9BRAS	R0FF16	R0F8H6	Uncharacterized protein.	Uncharacterized protein.	0.564
R0FF16_9BRAS	R0GEC8_9BRAS	R0FF16	R0GEC8	Uncharacterized protein.	Prolamin_like domain-containing protein.	0.769
R0GCJ5_9BRAS	R0GEC8_9BRAS	R0GCJ5	R0GEC8	Uncharacterized protein.	Prolamin_like domain-containing protein.	0.882
R0GEC8_9BRAS	R0EX13_9BRAS	R0GEC8	R0EX13	Prolamin_like domain-containing protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.711
R0GEC8_9BRAS	R0EZY0_9BRAS	R0GEC8	R0EZY0	Prolamin_like domain-containing protein.	F-box domain-containing protein.	0.523
R0GEC8_9BRAS	R0F8H6_9BRAS	R0GEC8	R0F8H6	Prolamin_like domain-containing protein.	Uncharacterized protein.	0.542
R0GEC8_9BRAS	R0FE62_9BRAS	R0GEC8	R0FE62	Prolamin_like domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.775
R0GEC8_9BRAS	R0FF16_9BRAS	R0GEC8	R0FF16	Prolamin_like domain-containing protein.	Uncharacterized protein.	0.769
R0GEC8_9BRAS	R0GCJ5_9BRAS	R0GEC8	R0GCJ5	Prolamin_like domain-containing protein.	Uncharacterized protein.	0.882
R0GEC8_9BRAS	R0GGD4_9BRAS	R0GEC8	R0GGD4	Prolamin_like domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.540
R0GEC8_9BRAS	R0GQ82_9BRAS	R0GEC8	R0GQ82	Prolamin_like domain-containing protein.	Uncharacterized protein.	0.584